STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1065Formate dehydrogenase major subunit; Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (889 aa)    
Predicted Functional Partners:
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
 
 0.999
fdnI1
Formate dehydrogenase, gamma subunit; Function of strongly homologous gene; enzyme.
 
 
 0.978
fdhB
Formate dehydrogenase iron-sulfur subunit; Function of strongly homologous gene; enzyme.
 
 
 0.967
hoxF
NAD-reducing hydrogenase HoxS subunit alpha (HoxF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.957
hyfG
Hydrogenase-4 component G; Function of strongly homologous gene; enzyme.
  
 
 0.956
XM1_2181
Putative Fe-S-cluster-containing hydrogenase components 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
 
 0.956
XM1_3481
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.
 
 
 0.947
fdh3A
Formate dehydrogenase alpha subunit precursor (tat pathway signal); Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 
0.927
purU
Formyltetrahydrofolate hydrolase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.900
fdhD-2
Putative formate dehydrogenase accessory protein FdhD-like; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
 
 0.894
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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