STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
maoC3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (515 aa)    
Predicted Functional Partners:
boxC
Benzoyl-CoA-dihydrodiol lyase; Function of strongly homologous gene; enzyme.
 
 0.969
XM1_1067
Putative hydrolase or acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.831
XM1_1066
Homologs of previously reported genes of unknown function.
 
     0.818
paaG
acyl-CoA hydratase(Phenylacetate degradation probable enoyl-CoA hydratase PaaB,5-261); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.801
paaI
Phenylacetate pathway hotdog-fold thioesterase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.773
paaK-2
phenylacetyl-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 
 0.732
boxB
Benzoyl-CoA oxygenase component B; Function of strongly homologous gene; enzyme.
 
  
 0.700
boxA
Benzoyl-CoA oxygenase component A; Function of strongly homologous gene; enzyme.
 
 
 0.673
paaK
phenylacetyl-CoA ligase(AMP-dependent synthetase/ligase,85-356); Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 
 0.672
aroK
Shikimate kinase(Shikimate kinase,126-281); Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
  
 0.653
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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