STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1074Indolepyruvate ferredoxin oxidoreductase; Function of strongly homologous gene; enzyme. (699 aa)    
Predicted Functional Partners:
XM1_1077
Indolepyruvate ferredoxin oxidoreductase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.866
XM1_4144
Indolepyruvate oxidoreductase subunit lorB; Function of strongly homologous gene; enzyme.
 
 
 0.841
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.794
XM1_1072
Putative thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.751
sdhA
Succinate dehydrogenase flavoprotein subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.731
boxA
Benzoyl-CoA oxygenase component A; Function of strongly homologous gene; enzyme.
     
 0.632
paaG
acyl-CoA hydratase(Phenylacetate degradation probable enoyl-CoA hydratase PaaB,5-261); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.615
XM1_2900
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.588
boxB
Benzoyl-CoA oxygenase component B; Function of strongly homologous gene; enzyme.
 
     0.526
XM1_2547
Putative Indolepyruvate ferredoxin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
0.522
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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