STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1077Indolepyruvate ferredoxin oxidoreductase, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (503 aa)    
Predicted Functional Partners:
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.968
XM1_1074
Indolepyruvate ferredoxin oxidoreductase; Function of strongly homologous gene; enzyme.
 
 
 0.866
padI
NADH-dependent phenylglyoxylate dehydrogenase subunit beta; Function of strongly homologous gene; enzyme.
  
 
 0.742
XM1_2901
Putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.705
XM1_1078
Membrane-fusion protein; Function of strongly homologous gene; membrane component.
       0.648
XM1_1079
Putative ABC-type multidrug transport system(ABC transporter-like,46-164); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.648
XM1_1080
Putative ABC-type multidrug transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.648
iorA-2
Indolepyruvate oxidoreductase subunit IorA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
 
 0.597
XM1_2900
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.568
padG
NADH-dependent phenylglyoxylate dehydrogenase subunit alpha; Function of strongly homologous gene; enzyme.
  
 
 0.568
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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