STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1086Homologs of previously reported genes of unknown function. (363 aa)    
Predicted Functional Partners:
ligJ
4-Oxalomesaconate hydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.993
ligI
2-pyrone-4,6-dicarbaxylate hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.988
XM1_1091
Putative Protocatechuate 4,5-dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.970
ligB
Protocatechuate 4,5-dioxygenase, beta chain; Function of strongly homologous gene; enzyme.
 
  
 0.968
XM1_1094
Protocatechuate 4,5-dioxygenase, alpha chain; Function of strongly homologous gene; enzyme.
 
  
 0.958
ligK
4-hydroxy-4-methyl-2-oxoglutarate aldolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.921
XM1_1089
Homologs of previously reported genes of unknown function.
 
    0.886
XM1_0851
Putative FAD-dependent Phenol 2-monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.859
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.859
bclA
Putative Benzoate--CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.816
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.