STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaKMFS transporter, AAHS family, 4-hydroxybenzoate transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter. (465 aa)    
Predicted Functional Partners:
pobA
P-hydroxybenzoate hydroxylase(4-hydroxybenzoate 3-monooxygenase,1-389); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.650
ligI
2-pyrone-4,6-dicarbaxylate hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.550
ligK
4-hydroxy-4-methyl-2-oxoglutarate aldolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.535
XM1_1093
Aldo-keto reductase 2(Aldo/keto reductase,1-328); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.516
lldP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
   
 0.514
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase(NAD(P)-binding domain,1-135); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.456
XM1_1094
Protocatechuate 4,5-dioxygenase, alpha chain; Function of strongly homologous gene; enzyme.
  
    0.453
ligB
Protocatechuate 4,5-dioxygenase, beta chain; Function of strongly homologous gene; enzyme.
  
    0.453
fbpA
Iron(III) ABC transporter, periplasmic iron(III)-binding protein; Function of strongly homologous gene; transporter.
  
  
 0.453
XM1_4544
Putative ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.453
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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