STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyfBHydrogenase 4 subunit B(NADH:ubiquinone/plastoquinone oxidoreductase,126-407); Function of homologous gene experimentally demonstrated in an other organism; membrane component. (669 aa)    
Predicted Functional Partners:
hyfG
Hydrogenase-4 component G; Function of strongly homologous gene; enzyme.
 
 
 0.999
hyfC
Function of strongly homologous gene; enzyme.
 
 
 0.992
hyfI
Hydrogenase-4 subunit I; Function of strongly homologous gene; enzyme.
 
 
 0.991
hyfF
Hydrogenase-4 component F homolog(NADH:ubiquinone/plastoquinone oxidoreductase,129-409); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
0.987
hyfE
Hydrogenase-4 component E; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
 
  
 0.977
nuoL
NADH-quinone oxidoreductase subunit L; Function of strongly homologous gene; enzyme.
 
 
0.966
XM1_3481
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.
  
 
 0.862
XM1_1157
Homologs of previously reported genes of unknown function.
       0.697
nuoB
NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
 
 
 0.654
XM1_1065
Formate dehydrogenase major subunit; Function of strongly homologous gene; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.594
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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