STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1157Homologs of previously reported genes of unknown function. (357 aa)    
Predicted Functional Partners:
hyfG
Hydrogenase-4 component G; Function of strongly homologous gene; enzyme.
       0.707
hyfC
Function of strongly homologous gene; enzyme.
       0.705
hyfE
Hydrogenase-4 component E; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
       0.705
hyfI
Hydrogenase-4 subunit I; Function of strongly homologous gene; enzyme.
       0.705
hyfB
Hydrogenase 4 subunit B(NADH:ubiquinone/plastoquinone oxidoreductase,126-407); Function of homologous gene experimentally demonstrated in an other organism; membrane component.
       0.697
hyfF
Hydrogenase-4 component F homolog(NADH:ubiquinone/plastoquinone oxidoreductase,129-409); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.697
XM1_4782
Putative formate/nitrite transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.682
paaY
Transferase involved in phenylacetate degradation; Function of strongly homologous gene; enzyme.
    
 
 0.654
yrdA
Carbonic anhydrase/acetyltransferase; Function of strongly homologous gene; enzyme.
    
 
 0.654
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.577
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.