STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1176Homologs of previously reported genes of unknown function. (119 aa)    
Predicted Functional Partners:
XM1_1178
Signal transduction histidine kinase（ATPase-like, ATP-binding domain,296-432） Function of strongly homologous gene; receptor.
 
  
 0.931
XM1_1177
Uncharacterized protein; Function of strongly homologous gene; regulator.
 
  
 0.837
XM1_1175
Conserved membrane protein of unknown function(Cytochrome c domain,167-278); Homologs of previously reported genes of unknown function.
 
   
 0.731
XM1_1174
Conserved protein of unknown function(Dihaem cytochrome c,69-188); Homologs of previously reported genes of unknown function.
 
     0.694
ribB
Riboflavin biosynthesis protein RibBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.516
XM1_1179
Serine phosphatase RsbU（Protein phosphatase 2C-like,348-546） Function of strongly homologous gene; enzyme.
       0.491
XM1_2278
Homologs of previously reported genes of unknown function.
  
     0.489
XM1_4493
Function of strongly homologous gene; carrier.
 
     0.474
XM1_0264
Putative ABC transporter involved in resistance to organic solvents; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   0.446
XM1_0635
Homologs of previously reported genes of unknown function.
  
     0.443
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.