STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1180Polar amino acid transport system substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (254 aa)    
Predicted Functional Partners:
XM1_3558
PBPb domain-containing protein; Homologs of previously reported genes of unknown function.
  
     0.641
XM1_4335
Putative amino acid ABC transporter periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.587
XM1_1297
Homologs of previously reported genes of unknown function.
  
     0.554
XM1_4333
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.522
XM1_3556
Putative extracellular solute-binding protein, family 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.512
gltK
Glutamate and aspartate transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.507
XM1_1181
Homologs of previously reported genes of unknown function.
       0.506
XM1_4716
Conserved protein of unknown function (6-hydroxymethylpterin diphosphokinase MptE-like 270-419); Homologs of previously reported genes of unknown function.
  
 
   0.470
gltL
Glutamate/aspartate transport protein (ABC superfamily, atp_bind) (ABC transporter-like,41-165); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.455
XM1_2192
Putative ABC-type polar amino acid transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.455
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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