STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1184Di-and tricarboxylate transporters(Sodium/sulphate symporter,35-465); Function of strongly homologous gene; receptor. (465 aa)    
Predicted Functional Partners:
XM1_1185
Transcriptional regulator(Transcription regulator HTH, GntR,8-70;GntR, C-terminal,81-205); Function of strongly homologous gene; regulator.
     
 0.563
XM1_4468
Homologs of previously reported genes of unknown function.
 
     0.530
ytsJ
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.513
dme
NAD-dependent malic enzyme; Function of strongly homologous gene; putative enzyme.
  
  
 0.513
XM1_4760
Putative auxin efflux carrier; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
   0.476
XM1_0874
Homologs of previously reported genes of unknown function.
  
     0.462
XM1_4095
D12 class N6 adenine-specific DNA methyltransferase; Function of strongly homologous gene; enzyme.
  
    0.434
XM1_4298
Homologs of previously reported genes of unknown function.
  
     0.434
XM1_4469
Homologs of previously reported genes of unknown function.
 
     0.415
XM1_1434
Conserved exported protein of unknown function (Extensin-like, C-terminal; Homologs of previously reported genes of unknown function.
  
     0.413
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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