STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1218Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (470 aa)    
Predicted Functional Partners:
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 0.991
XM1_0113
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 0.937
XM1_3680
Response regulatory domain-containing protein; Homologs of previously reported genes of unknown function.
   
  0.912
chvI
Two-component system, OmpR family, response regulator ChvI; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.843
ytsJ
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.811
XM1_4283
Two-component system, OmpR family, response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.805
XM1_2326
CheY-like receiver; Function of strongly homologous gene; regulator.
 
 
 0.797
divK-3
Putative Polar-differentiation response regulator DivK; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.792
ompR
DNA-binding response regulator in two-component regulatory system with EnvZ; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.788
XM1_4673
Putative response regulator transcriptional regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.753
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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