STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1223Sirohydrochlorin cobaltochelatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (328 aa)    
Predicted Functional Partners:
cobI
Precorrin-2/cobalt-factor-2 C20-methyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the precorrin methyltransferase family.
 
  
 0.992
cobJ
Uncharacterized protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.974
cobH
Precorrin-8X/cobalt-precorrin-8 methylmutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.950
cobL
TP_methylase domain-containing protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.931
XM1_4239
Conserved protein of unknown function (Cobalamin (vitamin B12) biosynthesis CbiX 12-133; Homologs of previously reported genes of unknown function.
     
  0.900
cbiD
Putative cobalt-precorrin-6A synthase, cbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
   
 0.815
cobN
Aerobic cobaltochelatase subunit CobN; Function of strongly homologous gene; enzyme.
 
   
 0.760
cobD
Cobalamin biosynthesis protein CobD(Cobalamin biosynthesis CobD/CbiB,16-315); Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
     
 0.662
XM1_2029
Uroporphyrinogen-III methylase; Function of strongly homologous gene; enzyme.
 
  
 0.627
cobM
Precorrin-4 C(11)-methyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.620
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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