STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmgC(2S)-methylsuccinyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (553 aa)    
Predicted Functional Partners:
XM1_1405
Putative Dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.984
XM1_1238
Ethylmalonyl-CoA mutase; Function of strongly homologous gene; enzyme.
 
 
 0.974
ccr
Crotonyl-CoA reductase; Function of strongly homologous gene; enzyme.
 
 
 0.920
fadB
3-hydroxyacyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.801
XM1_3399
Enoyl-CoA hydratase/carnithine racemase; Function of strongly homologous gene; enzyme.
  
 0.757
atoB
acetyl-CoA acetyltransferase(Thiolase,4-394); Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.672
XM1_1373
Putative Citrate lyase beta subunit(Pyruvate/Phosphoenolpyruvate kinase,25-288); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.641
etfA
Electron transfer flavoprotein alpha-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.640
etfA-2
Electron transfer flavoprotein alpha-subunit; Function of strongly homologous gene; enzyme.
 
 
 0.640
etfA-3
Electron transfer flavoprotein alpha-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.640
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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