STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1297Homologs of previously reported genes of unknown function. (244 aa)    
Predicted Functional Partners:
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
   0.802
XM1_1294
Protein of unknown function; No homology to any previously reported sequences.
       0.773
queC
7-cyano-7-deazaguanine synthase（Rossmann-like alpha/beta/alpha sandwich fold,2-225） Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.773
XM1_1292
Beta-lactamase OXY-2（Beta-lactamase/transpeptidase-like, 38-293） Function of strongly homologous gene; enzyme.
       0.572
GSH1
Glutamate--cysteine ligase, chloroplastic; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
       0.572
XM1_3556
Putative extracellular solute-binding protein, family 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.558
XM1_1180
Polar amino acid transport system substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.554
gltK
Glutamate and aspartate transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.486
XM1_4716
Conserved protein of unknown function (6-hydroxymethylpterin diphosphokinase MptE-like 270-419); Homologs of previously reported genes of unknown function.
  
 
   0.456
XM1_4192
Putative histidine kinase A, N-terminal; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.452
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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