STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1319Putative Permease of the major facilitator superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the major facilitator superfamily. (523 aa)    
Predicted Functional Partners:
XM1_1320
Putative Multidrug resistance efflux pump(RND efflux pump, membrane fusion protein,45-334); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.991
alx
Inner membrane protein, (Integral membrane protein TerC, riboswitch-linked,17-321); Function of strongly homologous gene; membrane component.
 
   
 0.522
XM1_1318
Putative Response regulator（GGDEF domain,147-323） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.519
XM1_1321
Homologs of previously reported genes of unknown function.
       0.488
XM1_1323
Putative Exopolysaccharide synthesis (Exopolysaccharide synthesis, ExoD,11-185); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.457
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.440
XM1_1078
Membrane-fusion protein; Function of strongly homologous gene; membrane component.
 
 
 0.433
XM1_3338
Outer membrane protein; Function of strongly homologous gene; structure.
 
  
 0.418
XM1_4313
Putative multidrug efflux outer membrane protein, RND family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.408
gltB
Glutamate synthase (NADPH) large chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.403
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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