STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alxInner membrane protein, (Integral membrane protein TerC, riboswitch-linked,17-321); Function of strongly homologous gene; membrane component. (334 aa)    
Predicted Functional Partners:
XM1_1323
Putative Exopolysaccharide synthesis (Exopolysaccharide synthesis, ExoD,11-185); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.823
XM1_1321
Homologs of previously reported genes of unknown function.
       0.718
XM1_1319
Putative Permease of the major facilitator superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the major facilitator superfamily.
 
   
 0.522
XM1_1324
Putative Pirin-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process; Belongs to the pirin family.
       0.515
XM1_1320
Putative Multidrug resistance efflux pump(RND efflux pump, membrane fusion protein,45-334); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.457
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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