STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1420Uncharacterized protein; Homologs of previously reported genes of unknown function. (238 aa)    
Predicted Functional Partners:
lptB
Lipopolysaccharide export system ATP-binding protein; Function of strongly homologous gene; transporter.
 
  
  0.984
XM1_1419
Homologs of previously reported genes of unknown function.
 
   
 0.975
rpoN
RNA polymerase sigma-54 factor(RNA polymerase sigma factor 54,11-496); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.853
kdsD
D-arabinose 5-phosphate isomerase（Sugar isomerase (SIS),46-171） Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.846
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.771
XM1_4438
Homologs of previously reported genes of unknown function.
  
     0.750
XM1_4389
Cell shape determining protein MreD; Function of strongly homologous gene; structure.
  
     0.747
XM1_1247
Homologs of previously reported genes of unknown function.
  
     0.743
XM1_0875
Homologs of previously reported genes of unknown function.
  
     0.722
XM1_3702
Protein of unknown function; No homology to any previously reported sequences.
  
     0.719
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.