STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bolABolA family transcriptional regulator, general stress-responsive regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the BolA/IbaG family. (93 aa)    
Predicted Functional Partners:
ydhD
Monothiol glutaredoxin; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 0.886
XM1_1440
DnaJ-class molecular chaperone(Heat shock protein DnaJ, N-terminal,135-193); Function of strongly homologous gene; leader peptide.
   
 
 0.684
cobS-2
Aerobic cobaltochelatase subunit CobS; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.604
cobT-2
Aerobic cobaltochelatase subunit CobT(Cobalt chelatase, CobT subunit,19-618); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.579
rpoN
RNA polymerase sigma-54 factor(RNA polymerase sigma factor 54,11-496); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.551
rpoD
RNA polymerase, sigma 70 (sigma D) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.551
XM1_1411
Putative Glutathione S-transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   
 0.499
XM1_1437
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.483
grxC
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
 
 
 0.444
XM1_1899
Putative aminomethyltransferase(Glycine cleavage T-protein, N-terminal,10-196); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the GcvT family.
  
   
 0.424
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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