STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yumCFerredoxin--NADP reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (338 aa)    
Predicted Functional Partners:
csd
Cysteine sulfinate desulfinase; Function of strongly homologous gene; enzyme.
  
 
 0.911
trxB
Thioredoxin reductase, FAD/NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.905
ahpC
Alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like (detoxification of hydroperoxides); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.830
ahpC-2
Alkyl hydroperoxide reductase, C22 subunit; Function of strongly homologous gene; enzyme.
  
 
 0.830
trxA
Thioredoxin 1; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the thioredoxin family.
  
 
 0.793
pyrD
Dihydro-orotate oxidase, FMN-linked（Aldolase-type TIM barrel,5-351） Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
     
 0.783
XM1_1473
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.773
XM1_1471
Homologs of previously reported genes of unknown function.
       0.762
XM1_0855
Putative Thioredoxin domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.723
fdx
[2Fe-2S] ferredoxin; Function of homologous gene experimentally demonstrated in an other organism; carrier.
 
 
 
 0.640
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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