STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1485TPR repeat-containing protein（Tetratricopeptide-like helical,13-178） Function of strongly homologous gene; factor. (457 aa)    
Predicted Functional Partners:
slyD
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.784
mamA
Magnetosome protein MamA; Function of strongly homologous gene; membrane component.
 
 
 0.659
XM1_3212
Protein of unknown function; No homology to any previously reported sequences.
 
 
 0.659
XM1_1478
Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  
 0.632
XM1_4709
Putative methyltransferase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.625
XM1_1576
Conserved protein of unknown function (Tetratricopeptide-like helical,7-163); Homologs of previously reported genes of unknown function.
 
 
0.615
XM1_1549
Putative O-linked N-acetylglucosamine transferase(Tetratricopeptide-like helical,8-157); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.590
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.574
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the transferase hexapeptide repeat family.
       0.570
XM1_1299
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
0.569
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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