STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1488Putative cell shape determination protein CcmA(Protein of unknown function DUF583,29-123); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (166 aa)    
Predicted Functional Partners:
XM1_1489
Putative Membrane protein related to metalloendopeptidase(Duplicated hybrid motif,276-408); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.893
XM1_1487
Magnesium transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.784
XM1_1490
Homologs of previously reported genes of unknown function.
       0.558
XM1_1491
Homologs of previously reported genes of unknown function.
       0.558
XM1_1492
Homologs of previously reported genes of unknown function.
       0.547
XM1_1494
Conserved protein of unknown function(Tetratricopeptide-like helical,326-505); Homologs of previously reported genes of unknown function.
 
     0.439
mrdA
Cell division protein FtsI/penicillin-binding protein 2; Function of strongly homologous gene; enzyme.
 
   
 0.418
XM1_1257
ABC transporter; Function of strongly homologous gene; transporter.
   
    0.416
XM1_3304
Soluble lytic murein transglycosylase and related regulatory protein; Function of strongly homologous gene; enzyme.
  
    0.415
XM1_1539
Putative ATPase MipZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.412
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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