STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1556Putative Antidote protein, CopG/Arc/MetJ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (81 aa)    
Predicted Functional Partners:
XM1_1555
Putative ParE-like protein (ParDE toxin-antitoxin system); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
  
 
 0.891
uvrB
UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...]
       0.550
XM1_0365
Putative toxin antitoxin plasmid stabilization system ParE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the RelE toxin family.
  
 
 0.539
XM1_1134
Plasmid stabilization system; Function of strongly homologous gene; cell process.
  
 
 0.531
XM1_2165
Putative Plasmid stabilization system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.531
XM1_1384
Homologs of previously reported genes of unknown function.
  
 
 0.527
XM1_3511
Addiction module toxin, RelE/StbE; Function of strongly homologous gene; cell process.
  
 
 0.527
XM1_4534
Protein of unknown function (Cell growth inhibitor/plasmid maintenance toxic component 152-207); No homology to any previously reported sequences.
   
 
 0.470
cobB-2
Deacetylase of acetyl-CoA synthetase, NAD-dependent(Sirtuin family,7-234); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the sirtuin family. Class III subfamily.
   
    0.452
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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