STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1571Putative Fe-S oxidoreductase(v,216-419); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (448 aa)    
Predicted Functional Partners:
XM1_1573
Putative Nucleoside-diphosphate-sugar epimerase(NAD(P)-binding domain,4-299); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.811
XM1_1574
Putative Nucleoside-diphosphate-sugar epimerase(NAD(P)-binding domain,2-207); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.780
XM1_1016
Protein of unknown function; No homology to any previously reported sequences.
  
     0.758
XM1_1572
Conserved protein of unknown function (UDP-Glycosyltransferase/glycogen phosphorylase 169-402); Homologs of previously reported genes of unknown function.
       0.751
XM1_1570
Protein of unknown function; No homology to any previously reported sequences.
       0.623
XM1_0945
Putative radical SAM domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.597
XM1_1987
Putative nucleoside-diphosphate-sugar epimerase(Hopanoid-associated sugar epimerase,4-328); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.530
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.522
XM1_1802
D-glycero-alpha-D-manno-heptose-7-phosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.500
XM1_3868
Protein of unknown function [TPR repeat domain,2-168]; No homology to any previously reported sequences.
 
  
 0.498
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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