STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1612Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (467 aa)    
Predicted Functional Partners:
tsaC
tRNA(NNU) t(6)A37 threonylcarbamoyladenosine modification; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.826
XM1_1614
Homologs of previously reported genes of unknown function.
       0.675
XM1_1615
Homologs of previously reported genes of unknown function.
       0.675
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
   
 
 0.646
hoxF
NAD-reducing hydrogenase HoxS subunit alpha (HoxF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.646
XM1_4569
Putative L-lactate dehydrogenase, FMN-linked, lldD-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.646
lldD
L-lactate dehydrogenase, FMN-linked; Function of strongly homologous gene; enzyme.
 
 0.639
etfA-3
Electron transfer flavoprotein alpha-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.594
etfA
Electron transfer flavoprotein alpha-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.593
etfA-4
Electron transfer flavoprotein alpha-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.593
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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