STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfr-2Bacterioferritin, iron storage and detoxification protein(Ferritin-related,1-155); Iron-storage protein. (163 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.909
XM1_4194
Putative heme oxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.903
bfr
Bacterioferritin, iron storage and detoxification protein(Bacterioferritin,1-156); Iron-storage protein.
 
    
0.806
XM1_2054
BFD-like (2Fe-2S)-binding domain-containing protein; Function of strongly homologous gene; cell process.
  
 
 0.758
nasA
Nitrate reductase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.611
XM1_1651
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.559
XM1_1262
Putative Serine phosphatase RsbU(GAF domain,29-176;Protein phosphatase 2C-like,228-414); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
  
 0.521
XM1_4394
Putative serine phosphatase RsbU, regulator of sigma subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
  
 0.520
serB
Phosphoserine phosphatase(Phosphoserine phosphatase SerB,78-287); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.485
XM1_1650
Homologs of previously reported genes of unknown function.
       0.453
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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