STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1676Putative thioesterase family protein(Phenylacetic acid degradation-related domain,24-124); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (150 aa)    
Predicted Functional Partners:
XM1_1674
Conserved protein of unknown function(Uncharacterised peroxidase-related,10-185); Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
   
 0.780
XM1_1677
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
       0.775
mmgC-2
Short chain acyl-CoA dehydrogenase(Acyl-CoA dehydrogenase/oxidase,3-240); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.770
XM1_1681
Putative Phenylacetate-CoA ligase(AMP-dependent synthetase/ligase,116-276); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.768
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.575
XM1_1675
Putative GGDEF domain(GGDEF domain,422-606); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.565
atoB
acetyl-CoA acetyltransferase(Thiolase,4-394); Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.526
XM1_1673
Putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase(5'-Nucleotidase/apyrase,1-494); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 5'-nucleotidase family.
       0.518
XM1_1686
Putative Long-chain acyl-CoA synthetase(AMP-dependent synthetase/ligase,42-497); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.516
livF
Leucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
     0.492
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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