STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1699Homologs of previously reported genes of unknown function. (194 aa)    
Predicted Functional Partners:
XM1_1700
Homologs of previously reported genes of unknown function.
 
    0.954
XM1_1701
Homologs of previously reported genes of unknown function.
       0.813
XM1_4515
Homologs of previously reported genes of unknown function.
 
     0.781
XM1_1892
Homologs of previously reported genes of unknown function.
 
   
 0.548
XM1_1697
Putative cAMP-binding protein(RmlC-like jelly roll fold,16-150); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.540
XM1_1698
Putative transcriptional regulator, Crp/Fnr family(RmlC-like jelly roll fold,13-147); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.540
XM1_3045
Cytochrome b subunit of the bc complex; Function of strongly homologous gene; enzyme.
 
     0.538
XM1_2145
Nitrous oxidase accessory protein; Homologs of previously reported genes of unknown function.
  
     0.530
XM1_1893
Protein of unknown function(Domain of unknown function DUF59,4-78); No homology to any previously reported sequences.
 
   
 0.524
XM1_0384
Homologs of previously reported genes of unknown function.
   
  
 0.523
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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