STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1749Putative Phage-like DNA polymerase (DNA-directed DNA polymerase, family A, palm domain,221-474); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (669 aa)    
Predicted Functional Partners:
XM1_1752
Protein of unknown function（Bacteriophage APSE-1, protein 50,11-196） No homology to any previously reported sequences.
 
     0.909
XM1_1753
Protein of unknown function(Protein of unknown function DUF2800,9-401); No homology to any previously reported sequences.
 
   
 0.899
XM1_1750
Protein of unknown function; No homology to any previously reported sequences.
       0.773
XM1_1751
Protein of unknown function; No homology to any previously reported sequences.
       0.773
XM1_2223
Putative Terminase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.731
XM1_2220
Putative Phage portal protein, HK97 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.687
XM1_1747
Protein of unknown function; No homology to any previously reported sequences.
       0.661
XM1_1748
Protein of unknown function; No homology to any previously reported sequences.
       0.661
recA
DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
 
 0.640
XM1_2616
Putative Phage related DNA methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.629
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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