STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1783Homologs of previously reported genes of unknown function. (321 aa)    
Predicted Functional Partners:
XM1_4173
Putative trypsin-like serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.879
XM1_1000
Putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.876
XM1_3665
Suppressor protein SRP40; Function of strongly homologous gene; regulator.
    
 0.858
XM1_0611
Homologs of previously reported genes of unknown function.
   
 0.849
XM1_2325
Homologs of previously reported genes of unknown function.
   
 0.849
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.849
XM1_1064
Formate dehydrogenase beta subunit; Function of strongly homologous gene; enzyme.
   
 0.844
hoxF
NAD-reducing hydrogenase HoxS subunit alpha (HoxF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.844
XM1_0013
Conserved protein of unknown function (Multidrug resistance efflux transporter 5-106); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.828
XM1_0028
Homologs of previously reported genes of unknown function.
  
 0.827
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.