STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1785Homologs of previously reported genes of unknown function. (133 aa)    
Predicted Functional Partners:
yjjK
Energy-dependent translational throttle protein EttA; Function of strongly homologous gene; transporter.
       0.572
XM1_1783
Homologs of previously reported genes of unknown function.
       0.558
rnr
Putative Ribonuclease R(Ribonuclease II/R,260-591); 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.552
XM1_1787
Homologs of previously reported genes of unknown function.
       0.540
XM1_1788
Putative C-terminal processing peptidase（C-terminal-processing peptidase S41A,127-428） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase S41A family.
       0.480
XM1_1789
Homologs of previously reported genes of unknown function.
       0.480
XM1_1782
Protein of unknown function(Aldolase-type TIM barrel,16-130); No homology to any previously reported sequences.
       0.400
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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