STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1787Homologs of previously reported genes of unknown function. (255 aa)    
Predicted Functional Partners:
rnr
Putative Ribonuclease R(Ribonuclease II/R,260-591); 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
     
 0.788
XM1_1788
Putative C-terminal processing peptidase（C-terminal-processing peptidase S41A,127-428） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase S41A family.
  
    0.688
XM1_1789
Homologs of previously reported genes of unknown function.
       0.678
XM1_3802
Conserved protein of unknown function(containing MCP-signal associated domain,13-79;170-234); Homologs of previously reported genes of unknown function.
  
     0.633
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.605
XM1_0945
Putative radical SAM domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.596
XM1_1785
Homologs of previously reported genes of unknown function.
       0.540
XM1_1927
Conserved protein of unknown function, containing methyltransferase type 11; No homology to any previously reported sequences.
 
   
 0.527
XM1_3868
Protein of unknown function [TPR repeat domain,2-168]; No homology to any previously reported sequences.
  
     0.512
XM1_0729
Homologs of previously reported genes of unknown function.
 
   
 0.480
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.