STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbYHaloacid dehalogenase-like hydrolase, protein CbbY, plasmid(HAD-like domain,1-211); Function of strongly homologous gene; enzyme. (221 aa)    
Predicted Functional Partners:
yibF
Uncharacterized GST-like protein yibF (Thioredoxin-like fold 1-90; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
   0.795
XM1_1796
Homologs of previously reported genes of unknown function.
       0.784
XM1_1797
Conserved exported protein of unknown function(Cupredoxin,6-161); Homologs of previously reported genes of unknown function.
       0.784
XM1_1799
Putative uracil-DNA glycosylase(Uracil-DNA glycosylase-like,4-195); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.779
cbbM
Ribulose bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
 
   
 0.706
XM1_3979
APH domain-containing protein; Homologs of previously reported genes of unknown function.
  
    0.685
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.678
XM1_3101
Putative 3-phenylpropionic transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.624
XM1_1801
Putative Nucleotidyltransferase(Nucleotidyl transferase,11-234); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.597
rfbC-2
dTDP-4-dehydrorhamnose 3,5-epimerase(RmlC-like jelly roll fold,1-166); Function of strongly homologous gene; enzyme.
       0.596
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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