STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1799Putative uracil-DNA glycosylase(Uracil-DNA glycosylase-like,4-195); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (195 aa)    
Predicted Functional Partners:
yibF
Uncharacterized GST-like protein yibF (Thioredoxin-like fold 1-90; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.781
cbbY
Haloacid dehalogenase-like hydrolase, protein CbbY, plasmid(HAD-like domain,1-211); Function of strongly homologous gene; enzyme.
       0.779
XM1_1796
Homologs of previously reported genes of unknown function.
       0.773
XM1_1797
Conserved exported protein of unknown function(Cupredoxin,6-161); Homologs of previously reported genes of unknown function.
       0.773
rfbC-2
dTDP-4-dehydrorhamnose 3,5-epimerase(RmlC-like jelly roll fold,1-166); Function of strongly homologous gene; enzyme.
       0.586
XM1_1801
Putative Nucleotidyltransferase(Nucleotidyl transferase,11-234); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.586
XM1_1794
Uncharacterized protein; Homologs of previously reported genes of unknown function.
       0.538
XM1_1793
Putative TonB-dependent receptor plug（TonB-dependent receptor, beta-barrel,167-669） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
       0.522
XM1_0749
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.449
cobB-2
Deacetylase of acetyl-CoA synthetase, NAD-dependent(Sirtuin family,7-234); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the sirtuin family. Class III subfamily.
 
     0.447
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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