STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1809Putative Radical SAM domain-containing protein(Radical SAM, alpha/beta horseshoe,221-414); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure. (500 aa)    
Predicted Functional Partners:
XM1_1810
Putative Nucleoside-diphosphate-sugar epimerase(NAD-dependent epimerase/dehydratase,5-234); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.824
XM1_1016
Protein of unknown function; No homology to any previously reported sequences.
  
  
 
0.754
XM1_0898
Conserved protein of unknown function （contain Radical_SAM domain） Homologs of previously reported genes of unknown function.
  
  
 
0.753
XM1_0903
Conserved protein of unknown function （contain B12-binding and Radical SAM domain） Homologs of previously reported genes of unknown function.
  
  
 
0.753
XM1_0962
Conserved protein of unknown function (B12 binding domain 18-144; Homologs of previously reported genes of unknown function.
  
  
 
0.753
XM1_1808
Putative transketolase N-terminal section(Transketolase, N-termina,20-275); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.652
XM1_1807
Putative 1-deoxy-D-xylulose-5-phosphate synthase(Transketolase-like, C-terminal,187-310); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.640
serA2
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein(NAD(P)-binding domain,114-286); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.630
XM1_1805
Putative NAD-dependent epimerase/dehydratase(NAD(P)-binding domain,1-204); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.629
XM1_1804
Putative Transferase hexapeptide repeat(Sialic acid O-acyltransferase, NeuD,19-205; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.570
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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