STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1876Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (643 aa)    
Predicted Functional Partners:
XM1_1873
Phenylacetyl-CoA:acceptor oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.807
XM1_1872
Putative thioesterase/thiol ester dehydrase-isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.721
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.707
XM1_1875
Protein of unknown function; No homology to any previously reported sequences.
       0.580
XM1_1874
Putative Fe-S-cluster-containing hydrogenase components 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.573
padG
NADH-dependent phenylglyoxylate dehydrogenase subunit alpha; Function of strongly homologous gene; enzyme.
 
 
 0.572
XM1_2734
Putative Phenylacetyl CoA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.571
XM1_2900
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.539
XM1_2905
Conserved protein of unknown function (Acyl-CoA N-acyltransferase 1-146; Homologs of previously reported genes of unknown function.
 
 
 
 0.537
paaK
phenylacetyl-CoA ligase(AMP-dependent synthetase/ligase,85-356); Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.533
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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