STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1893Protein of unknown function(Domain of unknown function DUF59,4-78); No homology to any previously reported sequences. (101 aa)    
Predicted Functional Partners:
XM1_1892
Homologs of previously reported genes of unknown function.
 
   
 0.948
XM1_2783
Putative Fe-S cluster formation NifU-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.675
iscU
Scaffold protein;iron-binding protein believed to be involved in Fe-S protein formation or repair; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
    0.613
csd
Cysteine sulfinate desulfinase; Function of strongly homologous gene; enzyme.
 
  
 0.606
nifQ
NifQ protein,Protein involved in biosynthesis of iron-molybdenum cofactor of nitrogenase; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
    0.605
nifQ-3
NifQ protein,Protein involved in biosynthesis of iron-molybdenum cofactor of nitrogenase; Function of strongly homologous gene; factor.
  
    0.605
XM1_1895
Putative dihydroorotase(Dihydroorotase,21-426); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.604
boxB
Benzoyl-CoA oxygenase component B; Function of strongly homologous gene; enzyme.
  
  
 0.598
XM1_1894
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.594
XM1_1896
Putative asparagine synthase(Asparagine synthase, glutamine-hydrolyzing,2-507); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.531
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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