STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1908Putative Truncated possibly inactive lysyl-tRNA synthetase (Lysyl-tRNA synthetase-related 20-343); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (348 aa)    
Predicted Functional Partners:
kamA
Lysine 2,3-aminomutase（Lysine-2,3-aminomutase-related, 7-322） Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.920
efp
Elongation factor P（Translation elongation factor P,3-185） Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
   
 
 0.858
suhB
Inositol monophosphatase（Inositol monophosphatase,7-264） Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the inositol monophosphatase superfamily.
       0.535
sugE
Multidrug efflux system protein（Small multidrug resistance protein family,1-93） Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.534
XM1_4271
Putative RNA pseudouridine synthase(rluC/rluD); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.421
ribB
Riboflavin biosynthesis protein RibBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
      
 0.405
XM1_1323
Putative Exopolysaccharide synthesis (Exopolysaccharide synthesis, ExoD,11-185); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.402
dctQ
TRAP-type mannitol/chloroaromatic compound transport system, small permease component; Function of strongly homologous gene; transporter.
  
     0.401
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.400
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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