STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1922Putative PAS:GGDEF (Cache domain,34-127; PAS domain,277-392; GGDEF domain,386-558); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (568 aa)    
Predicted Functional Partners:
XM1_2133
Predicted Signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.944
XM1_1591
Membrane protein of unknown function(PAS domain,112-232); No homology to any previously reported sequences.
 
 0.923
XM1_2920
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 0.910
XM1_1906
Uncharacterized protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
0.886
XM1_2046
Signal transduction protein; Function of strongly homologous gene; transporter.
 
 0.871
XM1_4474
Conserved protein of unknown function (PAS domain 10-107; Homologs of previously reported genes of unknown function.
 
 0.866
XM1_2510
Protein of unknown function (Diguanylate phosphodiesterase, EAL domain); No homology to any previously reported sequences.
 
 0.858
XM1_1590
Homologs of previously reported genes of unknown function.
  
 
0.848
XM1_3256
Protein of unknown function; No homology to any previously reported sequences.
  
 
 0.848
XM1_4319
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.848
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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