STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1953Putative diguanylate cyclase (GGDEF domain)（GGDEF domain,208-379） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (395 aa)    
Predicted Functional Partners:
XM1_2133
Predicted Signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.847
XM1_2920
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 0.803
XM1_2046
Signal transduction protein; Function of strongly homologous gene; transporter.
 
 0.787
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
   0.773
XM1_3897
Uncharacterized protein; Homologs of previously reported genes of unknown function.
    0.773
XM1_4474
Conserved protein of unknown function (PAS domain 10-107; Homologs of previously reported genes of unknown function.
 
 0.772
XM1_2510
Protein of unknown function (Diguanylate phosphodiesterase, EAL domain); No homology to any previously reported sequences.
   
 0.765
XM1_4672
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.748
XM1_3035
Putative cyclic-di-GMP phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    0.721
XM1_0315
Homologs of previously reported genes of unknown function.
 
     0.718
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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