STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1959Homologs of previously reported genes of unknown function. (151 aa)    
Predicted Functional Partners:
XM1_1958
Homologs of previously reported genes of unknown function.
       0.642
XM1_4215
Homologs of previously reported genes of unknown function; Belongs to the UPF0262 family.
 
   
 0.642
ctaG
Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.575
XM1_4553
Homologs of previously reported genes of unknown function.
  
     0.543
XM1_3970
Protein of unknown function; No homology to any previously reported sequences.
  
     0.534
XM1_1957
Putative BadM/Rrf2 family transcriptional regulator (Transcription regulator Rrf2-like,5-143); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.450
XM1_2338
Homologs of previously reported genes of unknown function.
  
     0.447
XM1_2783
Putative Fe-S cluster formation NifU-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.444
XM1_0091
Homologs of previously reported genes of unknown function.
 
     0.416
ctaA
Heme A synthase; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
 
     0.403
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.