STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1966Conserved protein of unknown function(Uncharacterised domain UPF0070, N-terminal,21-63); Homologs of previously reported genes of unknown function. (227 aa)    
Predicted Functional Partners:
XM1_1967
Uncharacterized protein; Homologs of previously reported genes of unknown function.
       0.828
der
GTPase involved in ribosome synthesis and maintenance(GTP-binding protein EngA,4-449); GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.815
XM1_0270
Putative double-strand break repair protein, AddB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.719
XM1_1333
Homologs of previously reported genes of unknown function.
  
     0.681
XM1_3683
Protein of unknown function; No homology to any previously reported sequences.
  
     0.681
XM1_3134
Protein of unknown function; No homology to any previously reported sequences.
  
    0.673
XM1_1255
Homologs of previously reported genes of unknown function.
  
     0.671
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.664
XM1_1965
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.602
XM1_0129
Homologs of previously reported genes of unknown function.
  
     0.579
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.