STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1967Uncharacterized protein; Homologs of previously reported genes of unknown function. (443 aa)    
Predicted Functional Partners:
bamA
Putative outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.940
XM1_3132
Conserved protein of unknown function(containing Lipoprotein SmpA/OmlA domain,31-106;); Homologs of previously reported genes of unknown function.
  
 
 
 0.931
XM1_1609
Chaperone SurA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.905
bamD
Outer membrane protein assembly factor BamD(Outer membrane protein assembly factor BamD,14-245); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.888
der
GTPase involved in ribosome synthesis and maintenance(GTP-binding protein EngA,4-449); GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.865
XM1_1966
Conserved protein of unknown function(Uncharacterised domain UPF0070, N-terminal,21-63); Homologs of previously reported genes of unknown function.
       0.828
XM1_0875
Homologs of previously reported genes of unknown function.
  
    0.772
XM1_4438
Homologs of previously reported genes of unknown function.
  
     0.688
XM1_1965
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.617
XM1_0218
Putative Outer membrane protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.587
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.