STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1991Putative Nucleoside phosphorylase(Hopanoid-associated phosphorylase HpnG,22-224); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (235 aa)    
Predicted Functional Partners:
shc
Squalene--hopene cyclase(Hopene cyclase,21-640); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.963
XM1_1988
Glycosyltransferase(Glycosyl transferase, family 2, hopene-associated, HpnB,7-379); Function of strongly homologous gene; enzyme.
 
     0.941
XM1_1987
Putative nucleoside-diphosphate-sugar epimerase(Hopanoid-associated sugar epimerase,4-328); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.935
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
 0.922
mtnP
S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
    
 0.919
XM1_0016
Putative transcriptional regulator, AbrB family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
  0.902
XM1_0037
Cytosine-specific methyltransferase; Function of strongly homologous gene; enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
  0.902
XM1_1989
Putative phytoene synthase(Squalene/phytoene synthase HpnD,23-288); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.840
XM1_2127
Putative membrane protein actII-3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.797
XM1_1992
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.796
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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