STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_1992Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (383 aa)    
Predicted Functional Partners:
XM1_2127
Putative membrane protein actII-3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.805
shc
Squalene--hopene cyclase(Hopene cyclase,21-640); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.803
XM1_1991
Putative Nucleoside phosphorylase(Hopanoid-associated phosphorylase HpnG,22-224); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.796
XM1_1988
Glycosyltransferase(Glycosyl transferase, family 2, hopene-associated, HpnB,7-379); Function of strongly homologous gene; enzyme.
 
   
 0.790
XM1_1987
Putative nucleoside-diphosphate-sugar epimerase(Hopanoid-associated sugar epimerase,4-328); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.778
XM1_1993
Protein of unknown function; No homology to any previously reported sequences.
       0.773
XM1_4359
Putative oxidoreductase, Radical SAM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.758
XM1_2125
Homologs of previously reported genes of unknown function.
 
     0.732
XM1_4360
Putative glycosyl transferase, putative membrane-associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.687
XM1_3270
Amino_oxidase domain-containing protein; Homologs of previously reported genes of unknown function.
 
    0.618
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.