STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2003Flavin-nucleotide-binding protein; Function of strongly homologous gene; putative enzyme. (203 aa)    
Predicted Functional Partners:
XM1_2002
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.783
XM1_2004
Putative Glyoxalase/bleomycin resistance protein/dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.718
XM1_1620
MEMO1 family protein XM1_1620; Homologs of previously reported genes of unknown function; Belongs to the MEMO1 family.
  
    0.419
lldD
L-lactate dehydrogenase, FMN-linked; Function of strongly homologous gene; enzyme.
  
    0.417
XM1_4569
Putative L-lactate dehydrogenase, FMN-linked, lldD-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.417
mdh
Malate dehydrogenase(Malate dehydrogenase, type 3,3-313); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.409
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.