STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2028Putative Plastocyanin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (110 aa)    
Predicted Functional Partners:
nirB-2
Cytochrome c-552; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
     0.880
XM1_2038
Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
 0.829
nirF
Protein NirF; Function of strongly homologous gene; enzyme.
 
 
   0.804
XM1_2029
Uroporphyrinogen-III methylase; Function of strongly homologous gene; enzyme.
       0.784
XM1_2026
Cytochrome c-552; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
     0.687
XM1_2031
Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
   
 0.668
nirG
Protein NirG; Function of strongly homologous gene; enzyme.
 
     0.654
nirH
Protein NirH; Function of strongly homologous gene; enzyme.
 
     0.654
nirD-2
Protein NirD; Function of strongly homologous gene; enzyme.
 
     0.633
nirL
Protein NirL; Function of strongly homologous gene; enzyme.
 
     0.632
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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