STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2037Putative Heme d1 biosynthesis radical SAM protein NirJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (380 aa)    
Predicted Functional Partners:
nirG
Protein NirG; Function of strongly homologous gene; enzyme.
  
 0.971
XM1_2038
Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.971
nirD-2
Protein NirD; Function of strongly homologous gene; enzyme.
  
 0.970
nirH
Protein NirH; Function of strongly homologous gene; enzyme.
 
  
 0.969
nirL
Protein NirL; Function of strongly homologous gene; enzyme.
 
  
 0.968
XM1_2031
Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
  
 0.967
nirF
Protein NirF; Function of strongly homologous gene; enzyme.
 
  
 0.967
XM1_0945
Putative radical SAM domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 
0.908
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.907
nirS-2
Nitrite reductase; Function of strongly homologous gene; enzyme.
 
  
 0.843
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.