XM1_2063 protein (Magnetospirillum sp. XM1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

XM1_2063

Homologs of previously reported genes of unknown function. (133 aa)

Predicted Functional Partners:

XM1_3059

0.779

XM1_0354

0.777

XM1_3647

0.776

XM1_0458

0.774

XM1_2382

0.774

XM1_2366

0.773

XM1_2962

0.773

XM1_0550

0.772

XM1_0622

0.760

XM1_2950

0.644

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
XM1_0354	XM1_0458	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.772
XM1_0354	XM1_0622	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	Conserved protein of unknown function (Haemerythrin-like, metal-binding); Homologs of previously reported genes of unknown function.	0.754
XM1_0354	XM1_2063	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.777
XM1_0354	XM1_2366	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	Putative Hemerythrin-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.773
XM1_0354	XM1_2950	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	Putative bacterial hemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.570
XM1_0354	XM1_3059	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	Conserved protein of unknown function(containing Haemerythrin-like, metal-binding domain.1-134); Homologs of previously reported genes of unknown function.	0.783
XM1_0354	XM1_3647	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	Hemerythrin; Function of strongly homologous gene; carrier.	0.766
XM1_0458	XM1_0354	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Conserved protein of unknown function （Hemerythrin-like iron-binding protein） Homologs of previously reported genes of unknown function.	0.772
XM1_0458	XM1_0550	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	0.769
XM1_0458	XM1_0622	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Conserved protein of unknown function (Haemerythrin-like, metal-binding); Homologs of previously reported genes of unknown function.	0.757
XM1_0458	XM1_2063	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Homologs of previously reported genes of unknown function.	0.774
XM1_0458	XM1_3059	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Conserved protein of unknown function(containing Haemerythrin-like, metal-binding domain.1-134); Homologs of previously reported genes of unknown function.	0.773
XM1_0458	XM1_3647	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Hemerythrin; Function of strongly homologous gene; carrier.	0.769
XM1_0550	XM1_0458	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	Putative Bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.769
XM1_0550	XM1_0622	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	Conserved protein of unknown function (Haemerythrin-like, metal-binding); Homologs of previously reported genes of unknown function.	0.765
XM1_0550	XM1_2063	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.772
XM1_0550	XM1_2366	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	Putative Hemerythrin-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.765
XM1_0550	XM1_2382	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	Putative bacterial hemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.773
XM1_0550	XM1_2950	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	Putative bacterial hemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.583
XM1_0550	XM1_2962	Conserved protein of unknown function （Haemerythrin-like, metal-binding） Homologs of previously reported genes of unknown function.	Putative bacteriohemerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.768