STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_2065Surface lipoprotein; Function of strongly homologous gene; lipoprotein. (304 aa)    
Predicted Functional Partners:
XM1_0264
Putative ABC transporter involved in resistance to organic solvents; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 
 0.808
XM1_3545
Conserved protein of unknown function(cintaining Mammalian cell entry-related omain,38-115); Homologs of previously reported genes of unknown function.
 
   
 0.786
XM1_3544
Conserved protein of unknown function(containing Mammalian cell entry-related domain,36-113); Homologs of previously reported genes of unknown function.
 
   
 0.784
XM1_4361
Putative ABC-type transport system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 
 0.743
XM1_0874
Homologs of previously reported genes of unknown function.
 
 
 
 0.711
XM1_4131
ABC-type transport system involved in resistance to organic solvents, auxiliary component; Function of strongly homologous gene; transporter.
 
 
 
 0.703
XM1_4638
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
 
 
 0.640
XM1_2064
Signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
       0.547
XM1_4298
Homologs of previously reported genes of unknown function.
  
 
 
 0.543
XM1_1609
Chaperone SurA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.506
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.